scPhyloX.tools.PhyloCircular.tree

Functions

internal_clades_angles(clade, angles)
clade_angles(tree, arc, start)
clade_depth(tree)
draw_label(angle, depth, label, ax)
draw_internal_wedge(clade, angles, ax, depth)
draw_patch(angle, depth, ax, patch)
draw_baseline(node1, node2, ax, lc[, lw])
draw_depthline(angle, depth, cdepth, ax, lc[, lw])
draw_clade(clade, ax, angles, depths, lc, ...[, lw])
polar_plot(tree[, ax, arc, start, root_distance, ...])

Module Contents

internal_clades_angles(clade, angles)

clade_angles(tree, arc, start)

clade_depth(tree)

draw_label(angle, depth, label, ax)

draw_internal_wedge(clade, angles, ax, depth)

draw_patch(angle, depth, ax, patch)

draw_baseline(node1, node2, ax, lc, lw=1)

draw_depthline(angle, depth, cdepth, ax, lc, lw=1)

draw_clade(clade, ax, angles, depths, lc, root_distance, mdepth, label_leaf, patch_leaf, wedge, pad_label, pad_patch, pad_wedge, lw=1)

polar_plot(tree, ax=None, arc=350, start=0, root_distance=0.1, label_leaf=True, patch_leaf=True, wedge=True, pad_label=0, pad_patch=0, pad_wedge=0, externals=[], lw=1)